Index

P

picovcf::ApiMisuse (C++ class) picovcf::FileReadError (C++ class) picovcf::IGDData (C++ class) picovcf::IGDData::CURRENT_IGD_VERSION (C++ member) picovcf::IGDData::DEFAULT_SPARSE_THRESHOLD (C++ member) picovcf::IGDData::FixedHeader (C++ struct) picovcf::IGDData::getAltAllele (C++ function) picovcf::IGDData::getDescription (C++ function) picovcf::IGDData::getGenomeRange (C++ function) picovcf::IGDData::getIndividualIds (C++ function) picovcf::IGDData::getPloidy (C++ function) picovcf::IGDData::getPosition (C++ function), [1], [2] picovcf::IGDData::getRefAllele (C++ function) picovcf::IGDData::getSamplesWithAlt (C++ function) picovcf::IGDData::getSource (C++ function) picovcf::IGDData::getVariantIds (C++ function) picovcf::IGDData::hasVariantIds (C++ function) picovcf::IGDData::IGD_MAGIC (C++ member) picovcf::IGDData::IGD_PHASED (C++ member) picovcf::IGDData::IGDData (C++ function) picovcf::IGDData::IndexEntry (C++ struct) picovcf::IGDData::isPhased (C++ function) picovcf::IGDData::lowerBoundPosition (C++ function) picovcf::IGDData::numIndividuals (C++ function) picovcf::IGDData::numSamples (C++ function) picovcf::IGDData::numVariants (C++ function) picovcf::IGDWriter (C++ class) picovcf::IGDWriter::IGDWriter (C++ function) picovcf::IGDWriter::writeHeader (C++ function) picovcf::IGDWriter::writeIndex (C++ function) picovcf::IGDWriter::writeIndividualIds (C++ function) picovcf::IGDWriter::writeVariantIds (C++ function) picovcf::IGDWriter::writeVariantInfo (C++ function) picovcf::IGDWriter::writeVariantSamples (C++ function) picovcf::MalformedFile (C++ class) picovcf::mergeIGDs (C++ function) picovcf::picovcf_parse_structured_meta (C++ function) picovcf::VCFFile (C++ class) picovcf::VCFFile::currentVariant (C++ function) picovcf::VCFFile::getAllMetaInfo (C++ function)

picovcf::VCFFile::getContig (C++ function) picovcf::VCFFile::getFilePosition (C++ function) picovcf::VCFFile::getGenomeRange (C++ function) picovcf::VCFFile::getIndividualLabels (C++ function) picovcf::VCFFile::getMetaInfo (C++ function) picovcf::VCFFile::isUsingIndex (C++ function) picovcf::VCFFile::lowerBoundPosition (C++ function) picovcf::VCFFile::nextVariant (C++ function) picovcf::VCFFile::numIndividuals (C++ function) picovcf::VCFFile::numVariants (C++ function) picovcf::VCFFile::seekBeforeVariants (C++ function) picovcf::VCFFile::setFilePosition (C++ function) picovcf::vcfToIGD (C++ function) picovcf::VCFVariantInfo (C++ struct) picovcf::VCFVariantInfo::alternativeAlleles (C++ member) picovcf::VCFVariantInfo::chromosome (C++ member) picovcf::VCFVariantInfo::filter (C++ member) picovcf::VCFVariantInfo::format (C++ member) picovcf::VCFVariantInfo::identifier (C++ member) picovcf::VCFVariantInfo::information (C++ member) picovcf::VCFVariantInfo::position (C++ member) picovcf::VCFVariantInfo::quality (C++ member) picovcf::VCFVariantInfo::referenceAllele (C++ member) picovcf::VCFVariantView (C++ class) picovcf::VCFVariantView::FORMAT_GT (C++ member) picovcf::VCFVariantView::getAltAlleles (C++ function) picovcf::VCFVariantView::getChrom (C++ function) picovcf::VCFVariantView::getFilter (C++ function) picovcf::VCFVariantView::getFormat (C++ function) picovcf::VCFVariantView::getGenotypeArray (C++ function) picovcf::VCFVariantView::getID (C++ function) picovcf::VCFVariantView::getInfo (C++ function) picovcf::VCFVariantView::getIsPhased (C++ function) picovcf::VCFVariantView::getMaxPloidy (C++ function) picovcf::VCFVariantView::getPhasedness (C++ function) picovcf::VCFVariantView::getPosition (C++ function) picovcf::VCFVariantView::getQuality (C++ function) picovcf::VCFVariantView::getRefAllele (C++ function) picovcf::VCFVariantView::hasGenotypeData (C++ function) picovcf::VCFVariantView::parseToVariantInfo (C++ function)